Welcome to the all new Protein Links Page which have been updated on
Thursday, November 17, 2005 18:36
people have acessed this page.
Latest:
Taurinus IT consulting - New startup company for Life science informatics.
GeneQuiz.
Whatif modelling servers.
3 Dee - Database of Protein Domain Definitions.
Plotcorr - contacts in proteins using correlated mutations.
Seq Databases:
BLAST at the EBI. Fasta3 at the EBI. NCBI BLAST SearchBLITZ - Swiss-Prot database. PROSITE - Pattern search at EMBL.ISREC PatternFind ServerPROSITE Top pageScanProsite - Protein against PROSITELocate protein homologs. PropSearch.PropSearch (fast), Montpellier Biological Macromolecule Crystallization Database.Genobase Database Gateway.SRS - Sequence Retreival System at EBI.SRS - Sequence Retreival System at EMBL.IGD - Integrated Genomic Database.Genome database.
Sec Str Prediction:
PHD - Protein Prediction (at EMBL). PHD - Protein Prediction (at New York). DSC Form - At ICRF, no longer available Prof v1.0 - Son of DSC! SSP and NNSSP - Protein Secondary Structure Prediction. ?? SSPRED - EMBL Secondary Structure Prediction. SAPS - Statistical Analysis of Protein Sequences. SOPM - Self Optimized Prediction Method. SOPMA - Self Optimized Prediction Method with Alignments. NNPREDICT - Protein Secondary Structure Prediction. SSCP - Secondary Structural Content Prediction. ZPRED - Predict Secondary Structure of Aligned Sequences. PREDATOR request form MEMSAT - Transmembrane prediction. TMpred - Transmembrane prediction. DAS - Transmembrane prediction. Coiled Coils - Prediction from Protein Sequences.
Threading and Fold Recognition:
THREADER2 etc - David Jones at Warwick Protein Fold Recognition - Daniel Fischer TOPITS Fold recognition by prediction-based threading MAP - Fold recognition FoldFit Web Server
Sequence Analysis:
Protein Sequence Analysis Page - mathbio. Humanization bY Design. CPE - Prediction services. BCM Search Launcher - DNA and protein analysis service. Biology Workbench v1.4 EBI: Sequence Data Analysis Services Home page - Lots to do at the EBI PIR-Web - The Protein Identification Resource ExPASy - SeqAnalRef top page GenQuest - The Q server GenomeNet WWW server Protein Sequence Analysis (PSA) - E-mail Server DNA Data Bank of Japan (DDBJ) Laboratory for Mass Spectrometry and Gaseous Ion Chemistry PSORT WWW Server MIPS Home
Multiple Alignment:
CLUSTALW Multiple Sequence Alignment Form CLUSTALW and CLUSTALX - Download CINEMA - Viewer for aligned sequences AMAS - Analyse Multiply Aligned Sequences CAMELEON - Info about the program
Fold Databases:
SCOP - Structural Classification of Proteins. CATH - Protein Structure Classification. PDBsum - PDB Structure summaries. PROFIT - CAME page - PROFIT unavailable. Protein Motions Database. Protein Domain Server at BML. The ProDom Protein Domain Database The SBASE Page Pfam Homepage. EMBL Dali: 3-D protein structure searches NCBI VAST Vector Alignment Search Tool ISREC PatternFind Server Blocks WWW server
Homology Modelling:
DRAGON home page MODELLER page at the Rockefeller University TOPITS - PredictProtein Swiss-Model: Automated Protein Modelling Server Swiss-3DIMAGE: Database of annotated 3D images Whatif: protein structure analysis program Biotech Validation Suite for Protein Structures - Procheck + Whatif DINAMO - Tool For Comparative Modeling and Threading
Graphics:
Rasmol GRASP - Home Page MOLMOL - MOLecule analysis and MOLecule display Prepi - Protein REPresentations Interactively Swiss-PdbViewer MSI - Quanta & CHARMm etc.
Places:
EBI v.2 - European Bioinformatics Institute.
EBI - European Bioinformatics Institute.
CPE - Centre for Protein Engineering.
HGMP - Human Genome Mapping project.
NAG home page.
LLNL Biology and Biotechnology Research Programme.
Principles of Protein Structure Course - Birkbeck.
Cambridge Crystallographic Data Centre.
OCMS - Oxford Centre for Molecular Sciences.
ExPASy - Geneva University.
The BioMolecular Engineering Research Center.
Center for Biological Sequence Analysis - Denmark
Combinatorial Pattern Matching 1997
CASP2: Home Page
EMBL - WWW Services
Entrez MEDLINE query
ExPASy - Swiss-Prot, Prosite and Co.
NIH - Form for PDB query
SEQNET at Daresbury.
Protein Database WWW Server - PDB at the EBI.
Protein Database WWW Server - PDB.
Genobase Database Gateway.
Pedro's BioMolecular Research Tools.
Groups:
Journals: